CovidGraph: a graph to fight COVID-19

CovidGraph,HealthECCO

CovidGraph, HealthECCO

CovidGraph: a graph to fight COVID-19

By Alexander Erdl Sep 12, 2022 No Comments

We are extremely proud and excited that our first on CovidGraph and HealthECCO has been published. The whole team helped with support and it was written by Lea Gütebier. Thanks to all people and companies supporting our CovidGraph and HealthECCO project...

HealthECCO Community Calls

HealthECCO

HealthECCO Community Calls

By Alexander Erdl May 17, 2022 No Comments

Our Community Calls are back! We are happy to invite you all to our HEalthECCO Community Calls. These calls are open to all and dont follow a strict agenda. No matter if you want to check-in with us and just say “Hi!” and hear what we are...

HealthECCO @ Medical Informatics Europe Conference

HealthECCO

HealthECCO @ Medical Informatics Europe Conference

By Lea Gütebier May 09, 2022 No Comments

We are happy to announce that we will present CovidGraph at this year’s Medical Informatics Europe Conference MIE2022 taking place in Nice, 27th – 30th May. Together with Ron Henkel and Dagmar Waltemath from the Medical Informatics Laboratory...

All the sources

CovidGraph

All the sources

By Alexander Erdl Apr 21, 2022 No Comments

Just a quick update: We have revamped our CovidGraph page and added all the missing sources that we have incorporated in CovidGraph. Now the page includes all the sources we use like Hetionet or Reactome Besides our schema where some of these were already...

Bert NER Models & PubMedSucker 2.0

HealthECCO

Bert NER Models & PubMedSucker 2.0

By Alexander Erdl Feb 22, 2022 No Comments

It has been quiet for a few weeks around HealthECCO, but not because there is nothing going on, but rather because we have been busy. Today we want to give you a quick update on what we are currently working on: BERT NER models We started to explore the...

Neo4j Graphie Awards 2021

CovidGraph,HealthECCO

CovidGraph, HealthECCO

Neo4j Graphie Awards 2021

By Alexander Erdl Dec 01, 2021 No Comments

We are honoured to be awarded the 2021 Neo4j Graphie Award 🏆 in the category “Graphs4Good: Medical Research” Obviously meeting in person to celebrate was not possible, but we had a fun call in December: What are the Graphies? The annual...

CovidGraph Applications

CovidGraph,HealthECCO

CovidGraph, HealthECCO

CovidGraph Applications

By Alexander Erdl Nov 30, 2021 1 Comment

With CovidGraph we want to help researchers to quickly and efficiently find their way through the many, many COVID-19 datasets. This allows to explore papers, patents, existing treatments and medications around the family of the corona viruses for everyone...

How to create a heterogeneous Neo4j data loading pipeline framework (fast)

HealthECCO

How to create a heterogeneous Neo4j data loading pipeline framework (fast)

By Tim Bleimehl Jun 09, 2021 No Comments

tl;tr; Motherlode is a tool written in python, to run multiple programms (as docker images/containers), in an ordered sequence. It’s a little bit similar to a docker-compose but specialized in running sequences of containers and loading data into...